Selected Publications
Lister, R., Pelizzola, M., Dowen, R.H, Hawkins, R.D., Hon, G., Tonti-Filippini, J., Nery, J.R., Lee, L., Ye, Z., Ngo, Q-M., Edsall, L., Antosiewicz-Bourget, J., Stewart, R., Ruotti, V., Millar, A.H., Thomson, J.A., Ren, B. and Ecker, J.R. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. October 14 [Epub ahead of print] http://www.nature.com/nature/journal/vaop/ncurrent/index.html
Dowen, R.H., Engel, J.L., Shao F., Ecker, J.R. and Dixon, J.E. (2009) A family of bacterial cysteine protease type III effectors utilize acylation-dependent and independent strategies to localize to plasma membranes. J Biol Chem 284(23):15867-79.
Lister, R. and Ecker, J.R. (2009) Finding the fifth base: Genome-wide sequencing of cytosine methylation. Genome Res 19(6):959-66.
Hazen, S.P., Naef, F., Quisel, T., Gendron, J.M., Chen, H., Ecker, J.R., Borevitz, J.O. and Kay, S.A. (2009) Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol 10:R17.
Qiao, H., Chang, K.N., Yazaki, J. and Ecker, J.R. (2009) Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev 23:512-21.
Lister, R., Gregory, B.D. and Ecker, J.R. (2009) Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Curr Opin Plant Biol 12:107-18.
Cusick, M.E., Yu, H., Smolyar, A., Venkatesan, K., Carvunis, A.R., Simonis, N., Rual, J.F., Borick, H., Braun, P., Dreze, M., Vandenhaute, J., Galli, M., Yazaki, J., Hill, D.E., Ecker, J.R., Roth, F.P. and Vidal, M. (2009) Literature-curated protein interaction datasets. Nat Methods 61:39-46.
Liljegren, S.J., Leslie, M.E., Darnielle, L., Lewis, M.W., Taylor, S.M., Luo, R., Geldner, N., Chory, J., Randazzo, P.A., Yanofsky, M.F. and Ecker, J.R. (2009) Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development 136:1909-1918.