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Selected Publications

All of Joanne Chory's publications can be found on this PubMed link.

(Selected publications from 2008-present. Underlined publications have links to download the .pdf)

Chen, M., Galvao, R.M., Li, M., Burger, B., Bugea, J., Bolado, J., Chory J. (2010)
Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell Jun 25;141(7):1230-40.

Todesco, M., Balasubramanian, S., Hu, T.T., Traw, M.B., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, C., Lanz, C., Laitinen, R.A., Huang, Y., Chory, J., Lipka, V., Borevitz, J.O., Dangl, J.L., Bergelson, J., Nordborg, M., Weigel, D. (2010)
Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature Jun 3;465(7298):632-6.

Jaillais, Y., Chory, J. (2010)
Unraveling the paradoxes of plant hormone signaling integration. Nat Struct Mol Biol. Jun;17(6):642-5.

Chory, J. (2010)
Light signal transduction: an infinite spectrum of possibilities. Plant J. Mar;61(6):982-91.

Ibanes, M., Fabregas, N., Chory, J., Cano-Delgado, A.I. (2009)
Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. Proc Natl Acad Sci USA. Aug 11;106(32):13630-5.

Sellaro, R., Hoecker, U., Yanovsky, M., Chory, J., Casal, J.J. (2009)
Synergism of red and blue light in the control of Arabidopsis gene expression and development. Curr Biol. Jul 28;19(14):1216-20.

Geldner, N., Denervaud-Tendon, V., Hyman, D.L., Mayer, U., Stierhof, Y.D., Chory, J. (2009)
Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J. Jul;59(1):169-78.

Moreno, J.E., Tao, Y., Chory, J., Ballare, C.L. (2009)
Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. Proc Natl Acad Sci USA. Mar 24;106(12):4935-40.

Loudet, O., Michael, T.P., Burger, B.T., Le Mette, C., Mockler, T.C., Weigel, D., Chory, J. (2008)
A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci USA. Nov 4;105(44):17193-8.

Savaldi-Goldstein, S., Baiga, T.J., Pojer, F., Dabi, T., Butterfield, C., Parry, G., Santner, A., Dharmasiri, N., Tao, Y., Estelle, M., Noel, J.P., Chory, J. (2008)
New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A. Sep 30;105(39):15190-5.

Michael, T.P., Breton, G., Hazen, S.P., Priest, H., Mockler, T.C., Kay, S.A., Chory, J. (2008)
A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol. Sep 16;6(9):e225.

Leung, D.W., Otomo, C., Chory, J., Rosen, M.K. (2008)
Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. Proc Natl Acad Sci USA. Sep 2;105(35):12797-802.

Tao, Y., Ferrer, J.L., Ljung, K., Pojer, F., Hong, F., Long, J.A., Li, L., Moreno, J.E., Bowman, M.E., Ivans, L.J., Cheng, Y., Lim, J., Zhao, Y., Ballare, C.L., Sandberg, G., Noel, J.P., Chory, J. (2008)
Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell. Apr 4;133(1):164-76.

Filiault, D.L., Wessinger, C.A., Dinneny, J.R., Lutes, J., Borevitz, J.O., Weigel, D., Chory, J, Maloof, J.N. (2008)
Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proc Natl Acad Sci U S A. Feb 26;105(8):3157-62.

Michael, T.P., Mockler, T.C., Breton, G., McEntee, C., Byer, A., Trout, J.D., Hazen, S.P., Shen, R., Priest, H.D., Sullivan, C.M., Givan, S.A., Yanovsky, M., Hong, F., Kay, S.A., Chory, J. (2008)
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. Feb;4(2):e14.

Geldner N., Hyman, D,L,, Wang, X., Schumacher K., Chory, J. (2007)
Endosomal signaling of plant steroid receptor kinase BRI1. Genes Dev. Jul 1;21(13):1598-602.

Koussevitzky S., Nott A., Mockler T.C., Hong F., Sachetto-Martins G., Surpin M., Lim J., Mittler R., and J. Chory. (2007)
Signals from chloroplasts converge to regulate nuclear gene expression. Science May 4;316(5825):715-9.

Savaldi-Goldstein S., Peto C., and J. Chory. (2007)
The epidermis both drives and restricts plant shoot growth. Nature Mar 8;44697132): 199-202.

Belkhadir Y., and J. Chory. (2006)
Brassinosteroid signaling: a paradigm for steroid hormone signaling from the cell surface. Science Dec 1;314(5804): 1410-1.

Nemhauser, J.L., F. Hong, and J. Chory.  (2006)
Different plant hormones regulate similar processes through largely non-overlapping transcriptional responses.  Cell. 126: 467-475.

Wang, X. and J. Chory.  (2006)
Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane.  Science.  313:1118-1122.

Balasubramanian, S., S. Sureshkumar, M. Agrawal, T.P. Michael, C. Wessinger, J. Maloof, R. Clark, N. Warthmann, J. Chory, and D. Weigel.  (2006)
Phytochrome C mediates natural variation in flowering and light responses of Arabidopsis thaliana.  Nature Genet. 38: 711-715.

Vert, G., and J. Chory.  (2006)
Downstream nuclear events in brassinosteroid signaling.  Nature.  441: 96-100.

Chen, M., Y. Tao, J. Lim, A. Shaw, and J. Chory.  (2005)
Regulation of phytochrome B nuclear import through light-dependent masking of nuclear localization signals.  Curr. Biol. 15: 637-642.

Yin, Y., D. Vafeados, Y. Tao, S. Yoshida, T. Asami, and J. Chory.  (2005)
A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis.  Cell.  120: 249-259.

Kinoshita, T., A. Cano-Delgado, H. Seto, S. Hirayama, S. Fujioka, S. Yoshida, and J. Chory.  (2005)
Direct binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1.  Nature.  433: 167-171.

Nemhauser, J., T. Mockler, and J. Chory.  (2004)
Interdependency of brassinosteroids and auxin in Arabidopsis seedling growth.  PLoS Biology.  2: 1460-1471.

Mora-Garcia, S., G. Vert, Y. Yin, A. Cano-Delgado, H. Cheong, and J. Chory.  (2004)
Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis.  Genes Dev.  18: 448-460.

Cérdan, P. and J. Chory.  (2003)
Regulation of flowering time by light quality.  Nature.  423: 881-885. 

Borevitz, J., D. Liang, D. Plouffe, H.-S. Chang, T. Zhu, D. Weigel, C. Berry, E. Winzeler, and J. Chory.  (2003)
Large scale identification of single feature polymorphisms in complex genomes.  Genome Research.  13:513-23.

Larkin, R.M., J. Alonso, J. Ecker, and J. Chory.  (2003)
GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science.  299: 902-906.

Strand, Å, T. Asami, J. Alonso, J. Ecker, and J. Chory.  (2003)
Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrin IX.  Nature. 421: 79-83.

Zhao, Y., A. Hull, N. Gupta, K. Goss, J. Alonso, J. Ecker, J. Normanly, J. Chory, and J. Celenza.  (2002).
Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3.  Genes Dev. 16: 3100-3112.

Schroeder, D., M. Gahrtz, B. Maxwell, R.K. Cook, J. Kan, J. Alonso, J. Ecker, and J. Chory.  (2002).
De-etiolated 1 (DET1) and damaged DNA binding protein 1 (DDB1) interact to regulate Arabidopsis photomorphogenesis.  Curr. Biol.  12: 1462-1472.

Maloof, J.N., J.O. Borevitz, T. Dabi, J. Lutes, R. Nehring, J. Redfern, G. Trainer, J. Wilson, T. Asami, C. C. Berry, D. Weigel, and J. Chory.  (2001).
Natural variation in light sensitivity in Arabidopsis.  Nature Genetics.  29: 441-446.

Gil, P., E. Dewey, J. Friml, Y. Zhao, K. Snowden, J. Putterill, K. Palme, M. Estelle, and J. Chory. (2001).
BIG, a calossin-like protein required for polar auxin transport in Arabidopsis.  Genes Dev.  15: 1985-1997.

Wang, Z.-Y., H. Seto, S. Fujioka, S. Yoshida, and J. Chory.  (2001).
BRI1 is a critical component of a plasma membrane receptor for plant steroids.  Nature.  410: 380-383.

Zhao, Y., S. Christensen, C. Fankhauser, J. Cashman, J. Cohen, D. Weigel, and J. Chory.  (2001).
A role for flavin monooxygenase-like enzymes in auxin biosynthesis.  Science.  291: 306-309.

Mochizuki, N., J. Brusslan, R. Larkin, A. Nagatani, and J. Chory.  (2001).
Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction.  Proc. Natl. Acad. Sci.  98: 2053-2058.

He, Z., Z. Wang, J. Li, Q. Zhu, C. Lamb, P. Ronald, and J. Chory.  (2000).
Perception of brassinosteroids by the extracellular domain of the receptor kinase, BRI1. Science.  288: 2360-2363.

Neff, M., S. Nguyen, E. Malancharuvil, S. Fujioka, T. Noguchi, H. Seto, M. Tsubuki, T. Honda, S. Takatsuto, S. Yoshida, and J. Chory.  (1999).
BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. Proc. Natl. Acad. Sci.  96: 15316-15323.

Fankhauser, C., K.-C. Yeh, J.C. Lagarias, H. Zhang, T.D. Elich, and J. Chory.  (1999).
PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis.  Science. 284: 1539-1541.

Jarvis, R. P., L.-J. Chen, H.-m. Li, C. A. Peto, C. Fankhauser, and J. Chory.  (1998).
An Arabidopsis mutant defective in the plastid general protein import apparatus.  Science.  282: 100-103.

Li, J. and J. Chory.  (1997).
A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.  Cell. 90: 929-938.

Li, J., M. Biswas, A. Chao, D. Russell, and J. Chory.  (1997).
Conservation of function between mammalian and plant steroid 5a-reductases.  Proc. Natl. Acad. Sci.  94: 3554-3559.

Li, J., P. Nagpal, V. Vitart, T. McMorris, and J. Chory.  (1996).
A role for brassinosteroids in light-dependent development of Arabidopsis.  Science.  272: 398-401.       

Pepper, A., T. Delaney, T. Washburn, D. Poole, and J. Chory.  (1994).
DET1, a negative regulator of light-mediated development and gene expression in Arabidopsis, encodes a novel nuclear-localized protein.  Cell.  78: 109-116.

Susek, R., F.M. Ausubel, and J. Chory.  (1993).
Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development.  Cell.  74: 787-799.

Reed, J.W., P. Nagpal, D.S. Poole, M. Furuya, and J. Chory.  (1993).
Mutations in the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development.  Plant Cell.  5:147-157.

Chory, J., C. Peto, R. Feinbaum, L. Pratt and F. M. Ausubel. (1989).
Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light.  Cell. 58: 991-990.